Package: hmsidwR 1.1.2

hmsidwR: Health Metrics and the Spread of Infectious Diseases

A collection of datasets and supporting functions accompanying Health Metrics and the Spread of Infectious Diseases by Federica Gazzelloni (2024). This package provides data for health metrics calculations, including Disability-Adjusted Life Years (DALYs), Years of Life Lost (YLLs), and Years Lived with Disability (YLDs), as well as additional tools for analyzing and visualizing health data. Federica Gazzelloni (2024) <doi:10.5281/zenodo.10818338>.

Authors:Federica Gazzelloni [aut, cre]

hmsidwR_1.1.2.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
hmsidwR/json (API)
NEWS

# Install 'hmsidwR' in R:
install.packages('hmsidwR', repos = c('https://fgazzelloni.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fgazzelloni/hmsidwr/issues

Pkgdown/docs site:https://fgazzelloni.github.io

Datasets:
  • deaths2019 - Dataset: Health Metrics Data - Number of Deaths Due to 9 Causes in 2019
  • deaths9 - Health Metrics Data - Number of Deaths Due to 9 Causes in 6 Locations for the Years 2011 and 2021.
  • disweights - Dataset: Health Metrics Data - Disability Weights and Severity in 2019 and 2021
  • g7_hmetrics - Dataset: Health Metrics Data - G7 Countries
  • germany_lungc - Dataset: Health Metrics Data - Germany lungcancer Deaths 2019
  • gho_le_hale - Dataset: Global Health Observatory (GHO) - Countries Life Expectancy and Healthy Life Expectancy(HALE) 2000-2019
  • gho_lifetables - Dataset: Global Health Observatory (GHO) Life tables: WHO Global Life table values
  • id_affected_countries - Dataset: Health Metrics Data - Infectious Diseases 1980-2021
  • idDALY_map_data - Dataset: Health Metrics Data - Simple Feature Collection Average Disability-Adjusted Life Years (DALYs) per 100,000 population from 1990 to 2021
  • incprev_stroke - Global Region Health Metrics Data - Incidence and Prevalence for Stroke 2019 and 2021 Numbers - 5-year age groups from <1 to 85+ and both Location available Global
  • infectious_diseases - Dataset: Health Metrics Data - Infectious Diseases 1980-2021
  • meningitis - Dataset: Health Metrics Data - Meningitis
  • rabies - Dataset: Health Metrics Data - Rabies Deaths and DALYs from 1980 to 2021
  • sdi90_19 - Dataset: Health Metrics Data - Socio-Demographic Index (SDI) for 1990 and 2019
  • spatialdalys2021 - Health Metrics Data - Disability-Adjusted Life Years (DALYs) Estimations for 204 countries in 2021 with spatial information.

On CRAN:

Conda:

deathshealth-datainfectious-diseaseslifeexpectancy

4.70 score 4 stars 25 scripts 591 downloads 5 exports 56 dependencies

Last updated from:ab8c22eea9. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK194
source / vignettesOK242
linux-release-x86_64OK195
macos-release-arm64OK103
macos-oldrel-arm64OK149
windows-develOK159
windows-releaseOK118
windows-oldrelOK116
wasm-releaseOK163

Exports:gbd_get_datagetunzkbfitstring_searchtheme_hmsid

Dependencies:abindaskpassclassclassIntclicpp11curlDBIe1071farverFNNggplot2gluegstatgtablehttrintervalsisobandjsonliteKernSmoothlabelinglatticelifecyclemagrittrMASSmimeopensslpillarpkgconfigproxypurrrR6RColorBrewerRcpprlangs2S7scalessfsftimeshowtextshowtextdbspspacetimestarssyssysfontstibbleunitsutf8vctrsviridisLitewithrwkxtszoo

Welcome to hmsidwR!

Rendered fromhmsidwR.Rmdusingknitr::rmarkdownon May 11 2026.

Last update: 2024-11-10
Started: 2024-03-07

Readme and manuals

Help Manual

Help pageTopics
Dataset: Health Metrics Data - Number of Deaths Due to 9 Causes in 2019deaths2019
Health Metrics Data - Number of Deaths Due to 9 Causes in 6 Locations for the Years 2011 and 2021.deaths9
Dataset: Health Metrics Data - Disability Weights and Severity in 2019 and 2021disweights
Dataset: Health Metrics Data - G7 Countriesg7_hmetrics
Title: gbd_get_data - Fetch Data from GBD APIgbd_get_data
Dataset: Health Metrics Data - Germany lungcancer Deaths 2019germany_lungc
Download, Unzip and Read Data: getunzgetunz
Dataset: Global Health Observatory (GHO) - Countries Life Expectancy and Healthy Life Expectancy(HALE) 2000-2019gho_le_hale
Dataset: Global Health Observatory (GHO) Life tables: WHO Global Life table valuesgho_lifetables
Dataset: Health Metrics Data - Infectious Diseases 1980-2021id_affected_countries
Dataset: Health Metrics Data - Simple Feature Collection Average Disability-Adjusted Life Years (DALYs) per 100,000 population from 1990 to 2021idDALY_map_data
Global Region Health Metrics Data - Incidence and Prevalence for Stroke 2019 and 2021 Numbers - 5-year age groups from <1 to 85+ and both Location available Globalincprev_stroke
Dataset: Health Metrics Data - Infectious Diseases 1980-2021infectious_diseases
Kriging Best Fit: kbfit - Fit variogram models and kriging models to spatial data and select the best model based on the metrics valueskbfit
Dataset: Health Metrics Data - Meningitismeningitis
Dataset: Health Metrics Data - Rabies Deaths and DALYs from 1980 to 2021rabies
Dataset: Health Metrics Data - Socio-Demographic Index (SDI) for 1990 and 2019sdi90_19
Health Metrics Data - Disability-Adjusted Life Years (DALYs) Estimations for 204 countries in 2021 with spatial information.spatialdalys2021
Scan all folders and files to find a string: string_searchstring_search
Custom ggplot2 theme functiontheme_hmsid